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White, Robert T. Batey, Jacob C. Nucleic Acids Research , 45 13 , Fast, clash-free RNA conformational morphing using molecular junctions. Bioinformatics , 33 14 , Becka M.

Warfield, Peter C. Molecular simulations and Markov state modeling reveal the structural diversity and dynamics of a theophylline-binding RNA aptamer in its unbound state. Alex Plumridge, Steve P. Meisburger, Kurt Andresen, Lois Pollack. The impact of base stacking on the conformations and electrostatics of single-stranded DNA. Nucleic Acids Research , 45 7 , Physical Chemistry Chemical Physics , 19 28 , Genome-scale characterization of RNA tertiary structures and their functional impact by RNA solvent accessibility prediction.

RNA , 23 1 , Effect of mutations on internal dynamics of an RNA hairpin from hepatitis B virus. Biophysical Chemistry , , The eukaryote-specific N-terminal extension of ribosomal protein S31 contributes to the assembly and function of 40S ribosomal subunits. Nucleic Acids Research , 44 16 , Nucleic Acids Research , 44 10 , Rbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer. Nucleic Acids Research , 44 9 , Vega, O. Abian, A.

On the link between conformational changes, ligand binding and heat capacity. Journal of Computational Biology , 23 5 , Molecular Biology and Evolution , 33 5 , Mutational robustness and resilience of a replicative cis-element of RNA virus: Promiscuity, limitations, relevance. RNA Biology , 12 12 , Irina P. Nucleic Acids Research , 43 13 , Saurav Mallik, Sudip Kundu. Molecular interactions within the halophilic, thermophilic, and mesophilic prokaryotic ribosomal complexes: clues to environmental adaptation. Journal of Biomolecular Structure and Dynamics , 33 3 , Bo Zhao, Qi Zhang.

Current Opinion in Structural Biology , 30 , Other Related Techniques. Rasmus Fonseca, Dimitar V. Nucleic Acids Research , 42 15 , Biophysical Journal , 1 , Janghyun Lee, Elizabeth A.

Dethoff, Hashim M. Invisible RNA state dynamically couples distant motifs. Proceedings of the National Academy of Sciences , 26 , Anthony M. Mustoe, Charles L. Brooks, Hashim M. Annual Review of Biochemistry , 83 1 , Carver, Daron M. A novel protein distance matrix based on the minimum arc-length between two amino-acid residues on the surface of a globular protein. Hui Zhang, Peixuan Guo. Methods , 67 2 , Kathleen B.

Protein binding cannot subdue a lively RNA. Nature , , Roopa Thapar, Andria P. Denmon, Edward P.

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Charles G. Hoogstraten, Minako Sumita, Neil A. Current Protocols in Nucleic Acid Chemistry , 55 1 , Konstantin Berlin, Andrew Longhini, T. Kwaku Dayie, David Fushman. Journal of Biomolecular NMR , 57 4 , Hashim M. NMR studies of nucleic acid dynamics. Journal of Magnetic Resonance , , Arun A. Tanpure, Maroti G. Pawar, Seergazhi G. Israel Journal of Chemistry , 53 , Elite J.

Possik, Maroun S. Bou Sleiman, Ingrid R. Ghattas, Colin A. Randomized codon mutagenesis reveals that the HIV Rev arginine-rich motif is robust to substitutions and that double substitution of two critical residues alters specificity. Journal of Molecular Recognition , 26 6 , Leonardus M. Journal of Biomolecular NMR , 56 1 , Andrea Haller, Roger B. Altman, Marie F.

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Blanchard, Ronald Micura. Folding and ligand recognition of the TPP riboswitch aptamer at single-molecule resolution. Proceedings of the National Academy of Sciences , 11 , Molecular Genetics and Genomics , , Wei Huang, Michael F. Bardaro, Gabriele Varani, Gary P. Michael F. Bardaro, Gabriele Varani.

Independent alignment of RNA for dynamic studies using residual dipolar couplings. Journal of Biomolecular NMR , 54 1 , Gastroenterology , 1 , Kuznetsov, Phoebe A. Rice, Anjum Ansari. Journal of Molecular Biology , 5 , Kwaku Dayie.

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Nucleic Acids Research , 40 7 , RNA as a Drug Target. Conformational dynamics of the tetracycline-binding aptamer. Nucleic Acids Research , 40 4 , Examining the relationship between RNA function and motion using nuclear magnetic resonance. Jane Dyson. Roles of intrinsic disorder in protein—nucleic acid interactions.

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Nature Methods , 8 11 , Tali H. Reingewertz, Deborah E. Shalev, Assaf Friedler. Ram Prasad, Arieh Warshel. Prechemistry versus preorganization in DNA replication fidelity. Proteins: Structure, Function, and Bioinformatics , 79 10 , Megan Mayerle, Deepti L.